Index

_

__init__() (bovid.aggregates.custom_field.domain.CustomFieldAgg method) (bovid.aggregates.custom_field.repo.CustomFieldRepoFake method) (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.custom_field.repo.CustomFieldUnitOfWork method) (bovid.aggregates.molecule.domain.MoleculeAgg method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.molecule.repo.MoleculeRepoFake method) (bovid.aggregates.molecule.repo.MoleculeUnitOfWork method) (bovid.aggregates.smoke.domain.Smoke method) (bovid.aggregates.smoke.repo.SmokeRecord method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) (bovid.aggregates.smoke.repo.SmokeUnitOfWork method) (bovid.config.config.BovidServerAppConfig method) (bovid.custom_data.type_spec.CustomDataType method) (bovid.endpoints.db_smoke.SmokeDeleteResult method) (bovid.endpoints.db_smoke.SmokeFetchResult method) (bovid.endpoints.db_smoke.SmokeListingResult method) (bovid.endpoints.db_smoke.SmokePutPayload method) (bovid.endpoints.db_smoke.SmokePutResult method) (bovid.endpoints.db_smoke.SmokeUpdatePayload method) (bovid.endpoints.db_smoke.SmokeUpdateResult method) (bovid.server.BovidServerApp method) (bovid.state.BovidServerState method)

__new__() (bovid.custom_data.domain_types.TypeRec static method)

A

already_in_db (bovid.endpoints.db_smoke.SmokePutResult attribute) api (bovid.server.BovidServerApp attribute) APP (in module bovid.app) app_db (bovid.config.config.BovidServerAppConfig attribute)

app_db_engine (bovid.state.BovidServerState attribute) app_object_store (bovid.config.config.BovidServerAppConfig attribute) app_object_store_driver (bovid.state.BovidServerState attribute) AppConfigHTTPEndpoint (class in bovid.server)

B

base (bovid.config.config.BovidServerAppConfig attribute) bond_system_molecule (bovid.aggregates.molecule.domain.MoleculeAgg attribute) bovid module bovid.aggregates module bovid.aggregates.custom_field module bovid.aggregates.custom_field.domain module bovid.aggregates.custom_field.repo module bovid.aggregates.molecule module bovid.aggregates.molecule.domain module bovid.aggregates.molecule.repo module bovid.aggregates.smoke module bovid.aggregates.smoke.domain module bovid.aggregates.smoke.repo module bovid.aggregates_meta module bovid.app module bovid.config module bovid.config.config module bovid.constants module bovid.custom_data module

bovid.custom_data.domain_types module bovid.custom_data.type_spec module bovid.database module bovid.database_schema module bovid.endpoints module bovid.endpoints.custom_fields module bovid.endpoints.db_smoke module bovid.endpoints.molecules module bovid.endpoints.smoke module bovid.object_store module bovid.repos module bovid.server module bovid.smoke module bovid.sqlalchemy module bovid.state module BOVID_SERVER_APP_CONFIG_SCHEMA (in module bovid.config.config) BOVID_STATE_APP_STATE_KEY (in module bovid.state) BovidServerApp (class in bovid.server) BovidServerAppConfig (class in bovid.config.config) BovidServerState (class in bovid.state)

C

close() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) code (bovid.aggregates.molecule.domain.MoleculeAgg attribute) commit() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.custom_field.repo.CustomFieldUnitOfWork method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.molecule.repo.MoleculeUnitOfWork method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) (bovid.aggregates.smoke.repo.SmokeUnitOfWork method) concrete_type (bovid.custom_data.domain_types.TypeRec attribute) config (bovid.server.BovidServerApp attribute) conn (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL attribute) (bovid.aggregates.smoke.repo.SmokeRepoSQL attribute)

create() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) create_object_store_driver() (in module bovid.object_store) create_sqla_engine() (in module bovid.sqlalchemy) created_at (bovid.aggregates.custom_field.domain.CustomFieldAgg attribute) (bovid.aggregates.molecule.domain.MoleculeAgg attribute) CustomDataType (class in bovid.custom_data.type_spec) CustomFieldAgg (class in bovid.aggregates.custom_field.domain) CustomFieldHTTPEndpoint (class in bovid.endpoints.custom_fields) CustomFieldListingHTTPEndpoint (class in bovid.endpoints.custom_fields) CustomFieldRepoFake (class in bovid.aggregates.custom_field.repo) CustomFieldRepoProtocol (class in bovid.aggregates.custom_field.repo) CustomFieldRepoSQL (class in bovid.aggregates.custom_field.repo) CustomFieldUnitOfWork (class in bovid.aggregates.custom_field.repo)

D

data (bovid.aggregates.molecule.domain.MoleculeAgg attribute) delete() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint method) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint method) (bovid.endpoints.molecules.MoleculeHTTPEndpoint method)

DELETE_RESPONSES (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeHTTPEndpoint attribute) description (bovid.aggregates.custom_field.domain.CustomFieldAgg attribute) display_name (bovid.aggregates.custom_field.domain.CustomFieldAgg attribute) do_smoke_test() (in module bovid.app) dry_smoke_test() (in module bovid.app)

E

exists_by_name() (bovid.aggregates.custom_field.repo.CustomFieldRepoFake method) (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method)

F

fake_repo_storage (bovid.state.BovidServerState attribute)

from_smiles() (bovid.aggregates.molecule.domain.MoleculeAgg class method)

G

get() (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint method) (bovid.endpoints.custom_fields.CustomFieldListingHTTPEndpoint method) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint method) (bovid.endpoints.db_smoke.SmokeListingHTTPEndpoint method) (bovid.endpoints.molecules.MoleculeHTTPEndpoint method) (bovid.endpoints.molecules.MoleculeListingHTTPEndpoint method) (bovid.endpoints.smoke.SmokeTestHTTPEndpoint method) (bovid.server.AppConfigHTTPEndpoint method) get_app_config() (in module bovid.state)

get_bovid_state() (in module bovid.state) get_openapi_spec_yaml() (in module bovid.app) GET_RESPONSES (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint attribute) (bovid.endpoints.custom_fields.CustomFieldListingHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeListingHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeListingHTTPEndpoint attribute) (bovid.endpoints.smoke.SmokeTestHTTPEndpoint attribute) (bovid.server.AppConfigHTTPEndpoint attribute)

I

init_from_config() (bovid.state.BovidServerState class method)

is_fake_repo (bovid.state.BovidServerState attribute)

L

list() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method)

M

main() (in module bovid.smoke) module bovid bovid.aggregates bovid.aggregates.custom_field bovid.aggregates.custom_field.domain bovid.aggregates.custom_field.repo bovid.aggregates.molecule bovid.aggregates.molecule.domain bovid.aggregates.molecule.repo bovid.aggregates.smoke bovid.aggregates.smoke.domain bovid.aggregates.smoke.repo bovid.aggregates_meta bovid.app bovid.config bovid.config.config bovid.constants bovid.custom_data bovid.custom_data.domain_types bovid.custom_data.type_spec bovid.database bovid.database_schema bovid.endpoints bovid.endpoints.custom_fields bovid.endpoints.db_smoke bovid.endpoints.molecules bovid.endpoints.smoke bovid.object_store bovid.repos bovid.server bovid.smoke bovid.sqlalchemy bovid.state

MoleculeAgg (class in bovid.aggregates.molecule.domain) MoleculeHTTPEndpoint (class in bovid.endpoints.molecules) MoleculeListingHTTPEndpoint (class in bovid.endpoints.molecules) MoleculeRepo (class in bovid.aggregates.molecule.repo) MoleculeRepoFake (class in bovid.aggregates.molecule.repo) MoleculeRepoProtocol (class in bovid.aggregates.molecule.repo) MoleculeUnitOfWork (class in bovid.aggregates.molecule.repo)

N

name (bovid.aggregates.custom_field.domain.CustomFieldAgg attribute) (bovid.custom_data.domain_types.TypeRec attribute)

O

obj_driver (bovid.aggregates.molecule.repo.MoleculeRepo attribute)

P

PARAMS (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeHTTPEndpoint attribute) patch() (bovid.aggregates.custom_field.domain.CustomFieldAgg method) (bovid.aggregates.molecule.domain.MoleculeAgg method) (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint method) (bovid.endpoints.molecules.MoleculeHTTPEndpoint method) PATCH_REQUEST_BODY (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeHTTPEndpoint attribute) PATCH_RESPONSES (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeHTTPEndpoint attribute) PATH_PARAMS_ORDER (bovid.endpoints.custom_fields.CustomFieldHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeHTTPEndpoint attribute)

put() (bovid.endpoints.custom_fields.CustomFieldListingHTTPEndpoint method) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint method) (bovid.endpoints.db_smoke.SmokeListingHTTPEndpoint method) (bovid.endpoints.molecules.MoleculeListingHTTPEndpoint method) PUT_REQUEST_BODY (bovid.endpoints.custom_fields.CustomFieldListingHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeListingHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeListingHTTPEndpoint attribute) PUT_RESPONSES (bovid.endpoints.custom_fields.CustomFieldListingHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeHTTPEndpoint attribute) (bovid.endpoints.db_smoke.SmokeListingHTTPEndpoint attribute) (bovid.endpoints.molecules.MoleculeListingHTTPEndpoint attribute)

R

records (bovid.endpoints.db_smoke.SmokeListingResult attribute) Reference (in module bovid.repos) replace() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) repo (bovid.aggregates.custom_field.repo.CustomFieldUnitOfWork attribute) (bovid.aggregates.molecule.repo.MoleculeUnitOfWork attribute) (bovid.aggregates.smoke.repo.SmokeUnitOfWork attribute) resolve_app() (in module bovid.app) retrieve() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method)

retrieve_by_name() (bovid.aggregates.custom_field.repo.CustomFieldRepoFake method) (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) rollback() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.custom_field.repo.CustomFieldUnitOfWork method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.molecule.repo.MoleculeUnitOfWork method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method) (bovid.aggregates.smoke.repo.SmokeUnitOfWork method)

S

server (bovid.config.config.BovidServerAppConfig attribute) smiles (bovid.aggregates.molecule.domain.MoleculeAgg attribute) smoke (bovid.endpoints.db_smoke.SmokeFetchResult attribute) (bovid.endpoints.db_smoke.SmokePutPayload attribute) (bovid.endpoints.db_smoke.SmokeUpdatePayload attribute) Smoke (class in bovid.aggregates.smoke.domain) smoke() (in module bovid.smoke) smoke_id (bovid.aggregates.smoke.repo.SmokeRecord attribute) (bovid.endpoints.db_smoke.SmokePutResult attribute) smoke_test() (in module bovid.app) SmokeDeleteResult (class in bovid.endpoints.db_smoke) SmokeFetchResult (class in bovid.endpoints.db_smoke) SmokeHTTPEndpoint (class in bovid.endpoints.db_smoke) SmokeListingHTTPEndpoint (class in bovid.endpoints.db_smoke) SmokeListingResult (class in bovid.endpoints.db_smoke) SmokePutPayload (class in bovid.endpoints.db_smoke)

SmokePutResult (class in bovid.endpoints.db_smoke) SmokeRecord (class in bovid.aggregates.smoke.repo) SmokeRepoFake (class in bovid.aggregates.smoke.repo) SmokeRepoProtocol (class in bovid.aggregates.smoke.repo) SmokeRepoSQL (class in bovid.aggregates.smoke.repo) SmokeTestHTTPEndpoint (class in bovid.endpoints.smoke) SmokeUnitOfWork (class in bovid.aggregates.smoke.repo) SmokeUpdatePayload (class in bovid.endpoints.db_smoke) SmokeUpdateResult (class in bovid.endpoints.db_smoke) sql_conn (bovid.aggregates.molecule.repo.MoleculeRepo attribute) starlette_app (bovid.server.BovidServerApp attribute) state (bovid.server.BovidServerApp attribute) static_state (bovid.server.BovidServerApp attribute) success (bovid.endpoints.db_smoke.SmokeDeleteResult attribute) (bovid.endpoints.db_smoke.SmokeFetchResult attribute) (bovid.endpoints.db_smoke.SmokePutResult attribute) (bovid.endpoints.db_smoke.SmokeUpdateResult attribute)

T

tags (bovid.aggregates.molecule.domain.MoleculeAgg attribute) testing (bovid.config.config.BovidServerAppConfig attribute) type_name (bovid.custom_data.type_spec.CustomDataType attribute)

type_spec (bovid.aggregates.custom_field.domain.CustomFieldAgg attribute) (bovid.custom_data.domain_types.TypeRec attribute) TypeRec (class in bovid.custom_data.domain_types)

U

unregister() (bovid.aggregates.custom_field.repo.CustomFieldRepoFake method) (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) update() (bovid.aggregates.custom_field.repo.CustomFieldRepoSQL method) (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.smoke.repo.SmokeRepoSQL method)

update_tags() (bovid.aggregates.molecule.repo.MoleculeRepo method) (bovid.aggregates.molecule.repo.MoleculeRepoFake method) updated_at (bovid.aggregates.custom_field.domain.CustomFieldAgg attribute) (bovid.aggregates.molecule.domain.MoleculeAgg attribute)

V

value (bovid.aggregates.smoke.domain.Smoke attribute) (bovid.aggregates.smoke.repo.SmokeRecord attribute)